Journal papers

• Samiee, Niloufar, Sepideh Hajipour Sardouie, and Mohammad-Hadi Foroughmand-Aarabi. "A Transfer Learning Algorithm Based on Linear Regression for Between-Subject Classification of EEG Data." 2020 25th International Computer Conference, Computer Society of Iran (CSICC). IEEE, 2020.
• Moradi, Mohammad, Sama Goliaei, and Mohammad-Hadi Foroughmand-Araabi. "A Boolean network control algorithm guided by forward dynamic programming." PloS one 14.5 (2019): e0215449.
• Ahmadi, Meisam, et al. "Presenting a Computing Method for Finding the Central Verse of Quranic Surahs." 2018 8th International Conference on Computer and Knowledge Engineering (ICCKE). IEEE, 2018.
• Foroughmand-Araabi, Mohammad-Hadi, Sama Goliaei, and Bahram Goliaei. "A novel pattern matching algorithm for genomic patterns related to protein motifs." Journal of Bioinformatics and Computational Biology 18.1 (2020): 2050011-2050011.
• Malekpour A, Pakzad P, Foroughmand-Araabi MH, Goliaei S, Tusserkani R, Goliaei B, Sadeghi M, “Modeling the Probability Distributation of the Bacterial Burst Size via a Game-Theoretic Approach”, Journal of Bioinformatics and Computational Biology, (2018).
• Razaghi Moghadam Z, Foroughmand-Araabi MH, Goliaei S, Farahmand S, “CytoGTA: A Cytoscape Plugin for Identifying Discriminative Sub- network Markers Using a Game Theoretic Approach”, PLOS ONE, 12, (2017).
• Foroughmand-Araabi MH, Goliaei B, Alishahi K, Sadeghi M, “Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach”, Journal of Bioinformatics and Computational Biology, 13(02), (2015).
• Mehrpour SR, Nabian MH, Oryadi Zanjani L, Foroughmand-Araabi MH, Shahryar Kamrani R, “Descriptive epidemiology of traumatic injuries in 18890 adults: a 5-year-study in a tertiary trauma center in Iran”, Asian journal of sports medicine, 6(1), (2015).
• Goliaei S, Foroughmand-Araabi MH, “On the complexity of nonuniform wavelength-based machine”. International Journal of Natural Computing, pp 1-15 (2014).
• Foroughmand-Araabi MH, Goliaei B, Alishahi K, Sadeghi M, “Dependency of codon usage on protein sequence patterns: a statistical study”, Theoretical Biology and Medical Modeling, 11(1), 2 (2014).
• Goliaei S, Foroughmand-Araabi MH, “Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Lan- guages", Lecture Notes in Computer Science, 7956, pp. 90-101 (2013).
• Foroughmand-Araabi MH, Goliaei B, Sadeghi M, “iProsite: an improved prosite database achieved by replacing ambiguous positions with more informative representations”. Progress in Biological Sciences, 3(1), pp 67- 71 (2013).
• Foroughmand-Araabi MH, Goliaei S, “Lower Bounds on the Complexity of the Wavelength-Based Machine”, Unconventional Computation and Natural Computation, 7445, pp 94-105 (2012).
• Goliaei S, Foroughmand-Araabi MH, “Lower Bounds on the Compelxity of the Wavelength-Based Machine", Lecture Notes in Computer Science, 7445, pp. 94-105 (2012).
• Foroughmand-Araabi MH, Goliaei B, “Pattern Discovery in Genomic Cod- ing Sequences Based on Protein Motifs” (abstract). Biophysical Journal, 102(3), 186a. (2012).
• Foroughmand-AraabiMH,GoliaeiS,GoliaeiB,“ANovelPatternMatching Algorithm for Genomic Patterns Related to Protein Motifs”, Submitted.

Conferences

• Foroughmand-AraabiMH,GoliaeiS,McHardyA,“Single Cell Phylogenetic Tree Reconstruction, a Steiner Tree Based Algorithm”. In Single-cell data in space and time: mathematical and computational challenges, London, UK, (2019).
• Foroughmand-Araabi MH, Goliaei S, Goliaei B, “Global Topology of Codon Usage Equality Networks of Escherichia Coli Essential Genes”. In 2nd International Work-Conference on Bioinformatics and Biomedical Engineering, (2014).
• Foroughmand-Araabi MH, Goliaei B, “A Hamming Distance Algorithm for Degenerate Patterns”, IPM, Tehran, Iran, (2012).
• Foroughmand-Araabi MH, Goliaei B, Sadeghi M, Alishah K, “A Matrix Based Pattern Template for Protein Patterns Induced on Genome”, Iranian Conference on Bioinformatics (ICB), Third Iranian Conference on Bioinformatics, National Institute of Genetics Engineering and Biotechnology, Tehran, Iran, (2010).
• Foroughmand-Araabi MH, Minouchehr Z, Goliaei B, “Which characteristic forces a protein to choose the folded shape?”, Iranian Conference on Bioinformatics (ICB), Second Iranian Conference on Bioinformatics, IBB, University of Tehran, Tehran, Iran (2009).
• Foroughmand-Araabi MA, Shariatpanahi P, “Diversified Broadcasting in Wireless Networks”, 16th - 20th July, Ambleside, Lake District, UK (2007).
• Shariatpanahi P, Foroughmand-Araabi MH, “On Reliable Routing in Wire- less Networks with Diversity”, Fourth International Conference on Wireless and Optical Communications Networks, July 2- 4, Grand Hyatt Singapore (2007).
• Foroughmand-Araabi MH, Rahimian V, Ghodsi M, “Coordination Mech- anism For Selfish Scheduling, A review from average perspective”, Computer Society of Iran Computer Conference, Shahid Beheshti University, Tehran, Iran (2007).